Home > Publications(業績リスト)

2017年

2016年

  • 61. Sato-Akuhara N, Horio N, Kato-Namba A, Yoshikawa K, Niimura Y, Ihara S, Shirasu M, Touhara K (2016) Ligand specificity and evolution of mammalian musk odor receptors: Effect of single receptor deletion on odor detection. J Neurosci 36: 4482–4491. (PDF | UTokyoResearch | 東京大学プレスリリース)
  • 60. Touhara K, Niimura Y, Ihara S (2016) Vertebrate Odorant Receptors. in Chemosensory Transduction (eds. Frank Zufall & Steven D. Munger), Academic Press.
  • 59. Watanabe K, Tanaka H, Takahashi K, Niimura Y, Watanabe K, Kurihara Y (2016) NIRS-Based Language Learning BCI System. IEEE Sens J 16: 2726–2734.
  • 58. 新村芳人 (2016) 「「匂いの遺伝子」で進化をたどる」milsil (54号) No.6 Vol.9: 10–11. (Website)
  • 57. 新村芳人 (2016) 「脊椎動物の長寿ナンバーワン 400年も生きるサメ」現代化学 (11月号) 548: 10–11. (Website)
  • 56. 新村芳人 (2016) 「キリンの首はなぜ長い?」現代化学 (8月号) 545: 10–11. (Website)
  • 55. 新村芳人 (2016) 「哺乳類嗅覚受容体遺伝子の分子進化」日本味と匂学会誌 23(1): 3–10.
  • 54. 新村芳人 (2016) 「乳酸により活性化される嗅覚受容体は低酸素状態のセンサーとして機能する」細胞工学(最終号)35 (3): 223. (Website)
  • 53. 新村芳人 (2016) 「においのサイエンスFélicité vol.2 pp.2–9.

2015年

  • 52. Watanabe K, Niimura Y, Kurihara Y, Watanabe K (2015) Temporal changes in NIRS outputs in prefrontal regions when listening to languages. Artif Life Robotics 20: 183–189.
  • 51. 新村芳人 (2015) 「嗅覚受容体遺伝子の進化」におい・かおり環境学会誌 46: 261–263.
  • 50. 新村芳人 (2015) 「ゲノムから読み解く嗅覚の進化」アロマリサーチ (62号) 16: 164–171. (Website)
  • 49. 新村芳人 (2015) 「嗅覚受容体遺伝子──その進化と機能の多様性」医学のあゆみ (5/9号)、253: 473–479. (Website)

2014年

2013年

  • 43. Niimura Y* (2013) Identification of chemosensory receptor genes from vertebrate genomes. Methods Mol Biol 1068: 95–105. (PDF | Website)
  • 42. Wang Z, Pascual-Anaya J, Zadissa A, Li W, Niimura Y, et al. (2013) The draft genomes of soft-shell turtle and green sea turtle yield insights into the development and evolution of the turtle-specific body plan. Nat Genet 45: 701–706. (PDF)
    – This paper got the cover of Nature Genetics!
  • 41. Niimura Y* (2013) Identification of olfactory receptor genes from mammalian genome sequences. Methods Mol Biol 1003: 39–49. (PDF | Website)
  • 40. Matsumae H, Hamada M, Fujie M, Niimura Y, Tanaka H, Kawashima T (2013) A methodical microarray design enables surveying of expression of a broader range of genes in Ciona intestinalis. Gene 519: 82–90. (PDF)

2012年

  • 39. Niimura Y* (2012) Olfactory receptor multigene family in vertebrates: from the viewpoint of evolutionary genomics. Current Genomics 13: 103–111. (PDF)
  • 38. Hase T, Niimura Y* (2012) Protein-protein interaction networks: Structures, evolution, and application to drug design. Protein Interaction / Book 2 (ed. Weibo Cai), InTech. (PDF)
  • 37. Niimura Y* (2012) Evolution of chemosensory receptor genes in primates and other mammals. Post-Genome Biology of Primates, Primatology Monographs (eds. Hirohisa Hirai, Hiroo Imai, Yasuhiro Go), Springer.
  • 36. 新村芳人 (2012) 『興奮する匂い 食欲をそそる匂い 〜遺伝子が解き明かす匂いの最前線〜 』技術評論社 知りたい!サイエンスシリーズ
  • 35. 新村芳人 (2012) 「ゲノムの大きさ」『進化学事典』(日本進化学会 編)、共立出版
  • 34. 新村芳人 (2012) 「嗅覚受容体遺伝子ファミリー」『化学受容の科学』(東原和成 編)、化学同人 DOJIN BIOSCIENCEシリーズ

2011年

  • 33. Johnson TA, Niimura Y, Tanaka H, Nakamura Y, Tsunoda T (2011) hzAnalyzer: detection, quantification, and visualization of contiguous homozygosity in high-density genotyping datasets. Genome Biol 12: R21. (PDF)

2010年

  • 32. Hase T, Niimura Y*, Tanaka H (2010) Difference in gene duplicability may explain the difference in overall structure of protein-protein interaction networks among eukaryotes. BMC Evol Biol 10: 358. (PDF)
    – Top 1 BMC Evolutionary Biology: Most viewed articles in past 30 days
  • 31. Nakagawa S, Niimura Y, Miura K, Gojobori T (2010) Dynamic evolution of translation initiation mechanisms in prokaryotes. Proc Natl Acad Sci USA 107: 6382–6387. (PDF)
  • 30. Matsui A, Go Y, Niimura Y* (2010) Degeneration of olfactory receptor gene repertories in primates: No direct link to full trichromatic vision. Mol Biol Evol 27: 1192–1200. (PDF)
  • 29. 新村芳人、柴田匡邦、大橋渉、田中博 (2010) 「医療に対するインフォマティクスからのアプローチ:医療の効率化へ向けて」日本バイオインフォマティクス学会ニュースレター第20号 pp. 2–4. (PDF)

2009年

  • 28. Niimura Y* (2009) Evolutionary dynamics of olfactory receptor genes in chordates: Interaction between environments and genomic contents. Human Genomics 4: 107–118. (PDF)
  • 27. Niimura Y* (2009) On the origin and evolution of vertebrate olfactory receptor genes: Comparative genome analysis among 23 chordate species. Genome Biol Evol 1: 34–44. (PDF)
    – Top 3 full-text HTML downloaded article in Genome Biology and Evolution during 2009
  • 26. 新村芳人 (2009) 「嗅覚受容体遺伝子ファミリーの進化ダイナミクス ─ゲノムと環境の相互作用─」実験医学 (12月号) 27: 3093–3102. (Website)

2008年

  • 25. Nei M, Niimura Y, Nozawa M (2008) The evolution of animal chemosensory receptor gene repertoires: roles of chance and necessity. Nat Rev Genet 9: 951–963. (PDF)
  • 24. Go Y, Niimura Y (2008) Similar numbers but different repertoires of olfactory receptor genes in humans and chimpanzees. Mol Biol Evol 25: 1897–1907. (PDF)
  • 23. Hase T, Niimura Y*, Kaminuma T, Tanaka H (2008) Non-uniform survival rate of heterodimerization links in the evolution of the yeast protein-protein interaction network. PLoS ONE 27: e1667. (PDF)
  • 22. Nakagawa S, Niimura Y, Gojobori T, Tanaka H, Miura K (2008) Diversity of preferred nucleotide sequences around the translation initiation codon in eukaryote genomes. Nucleic Acids Res 36: 861–871. (PDF)
  • 21. Genome Information Integration Project and H-Invitational 2 Consortium. Yamasaki C, Murakami K, Fujii Y, Sato Y, Harada E, ..., Niimura Y, et al. (2008) The H-Invitational Database (H-InvDB), a comprehensive annotation resource for human genes and transcripts. Nucleic Acids Res 36: D793–799. (PDF)
  • 20. Niimura Y* (2008) Olfactory Receptor Genes: Evolution. in Encyclopedia of Life Sciences, John Wiley & Sons, Inc. (PDF | Website)
  • 19. 新村芳人、根井正利 (2008) 「化学受容体遺伝子ファミリーの進化」実験医学 (3月号) 26: 484–491. (Website)

2007年

  • 18. Niimura Y*, Nei M (2007) Extensive gains and losses of olfactory receptor genes in mammalian evolution. PLoS ONE 2: e708. (PDF)
  • 17. Niimura Y*, Nei M (2007) Major gene families in humans and their evolutionary history. in Henry Stewart Talks, Human Population Genetics (ed. Luigi Luca Cavalli-Sforza and Marcus Feldman) (Website)

2006年

  • 16. Niimura Y*, Nei M (2006) Evolutionary dynamics of olfactory and other chemosensory receptor genes in vertebrates. J Hum Genet 51: 505–517. (PDF)
  • 15. 新村芳人、ロベルト・バレロ、五條堀孝 (2006) 「真核生物におけるmRNA翻訳制御のインフォマティクス:開始コドン周辺の塩基パターン解析とマイクロRNAの標的遺伝子予測」『機能性Non‐coding RNA』(河合剛太・金井昭夫 編)、クバプロ pp. 189–202.

2005年

  • 14. Niimura Y*, Nei M (2005) From The Cover: Evolutionary dynamics of olfactory receptor genes in fishes and tetrapods. Proc Natl Acad Sci USA 102: 6039–6044. (PDF)
    – This paper was introduced in Editor's Choice in Science! (PDF)
  • 13. International Rice Genome Sequencing Project. Annotation and Analysis: Iwama H, Gojobori T, Itoh T, Niimura Y, Fujii Y, et al. (2005) The map-based sequence of the rice genome. Nature 436: 793–800. (PDF)
  • 12. Niimura Y*, Nei M (2005) Comparative evolutionary analysis of olfactory receptor gene clusters between humans and mice. Gene 346: 13–21. (PDF)
  • 11. Niimura Y*, Nei M (2005) Evolutionary changes of the number of olfactory receptor genes in the human and mouse lineages. Gene 346: 23–28. (PDF)

2003年以前

  • 10. Niimura Y, Nei M (2003) Evolution of olfactory receptor genes in the human genome. Proc Natl Acad Sci USA 100: 12235–12240. (PDF)
  • 9. Niimura Y, Terabe M, Gojobori T, Miura K (2003) Comparative analysis of the base biases at the gene terminal portions in seven eukaryote genomes. Nucleic Acids Res 31: 5195–5201. (PDF)
  • 8. 新村芳人、五條堀孝 (2003) 「理論生物学:バイオインフォマティクス」『生物物理学とはなにか』(シリーズ・ニューバイオフィジックスII−10)(曽我部正博・郷信広 編)、共立出版株式会社 pp. 125-140. (amazon)
  • 7. Sasaki T, Matsumoto T, Yamamoto K, Sakata K, Baba T, Katayose Y, Wu J, Niimura Y, et al. (2002) The genome sequence and structure of rice chromosome 1. Nature 420: 312–316. (PDF)
  • 6. Niimura Y, Gojobori T (2002) In silico chromosome staining: Reconstruction of Giemsa bands from the whole human genome sequence. Proc Natl Acad Sci USA 99: 797–802. (PDF)
  • 5. Homma R, Kimoto T, Niimura Y, Krivosheev A, Hara T, Ohta Y, Kawato S (2000) Real-time fluorescence analysis on molecular mechanisms for regulation of cytochrome P450scc activity upon steroidogenic stimulation in adrenocortical cells. J Inorg Biochem 82: 171–180.
  • 4. 五條堀孝、新村芳人 (2000) 「情報生物学の発展に向けて」生物物理 40: 318–319.
  • 3. Sato Y, Niimura Y, Yura Y, Go M (1999) Module-intron correlation and intron sliding in family F/10 xylanase genes. Gene 238: 93–101.
  • 2. 新村芳人 (1998) 「第2回東アジア生物物理学会に参加して」生物物理 38: 27–28.
  • 1. Homma R, Kouyama T, Yamada M, Niimura Y, Krivosheev A, Hara T, Kawato S (1997) Time resolved study of effect of chlorpromazine on mobility of cytochrome P-450 and phospholipids in the inner membrane of adrenocortical mitochondria. J Pharm Biomed Anal 15: 1215–1222.
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